Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10713289 chr1:31729281 AT/A 1.83E-6 492 22.85 31.27 31.27 KM Plot
PRAD rs10734456 chr11:1607346 G/T 0.000162 494 28.62 32.63 30.3 KM Plot
PRAD rs10734772 chr12:9472018 A/C 2.16E-12 487 17.05 25.5 31.37 KM Plot
PRAD rs1073540 chr9:72829814 A/C 1.73E-5 494 30.93 30.2 22.45 KM Plot
PRAD rs10741205 chr10:131798192 G/T 7.27E-6 480 26.37 29.13 31.27 KM Plot
PRAD rs10743659 chr12:9471036 A/G 2.43E-12 485 17.05 24.6 31.37 KM Plot
PRAD rs10753248 chr1:31785156 G/A 8.99E-6 491 22.87 31.33 30.87 KM Plot
PRAD rs1075654 chr9:136928276 C/T 9.18E-14 494 31.18 30.85 4.57 KM Plot
PRAD rs1076539 chr22:18439598 A/G 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs1076540 chr22:18439958 C/T 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs1076541 chr22:18440026 C/T 3.06E-8 490 30.8 32.22 26.03 KM Plot
PRAD rs1076542 chr22:18446452 A/G 5.41E-6 494 26.03 31.87 30.9 KM Plot
PRAD rs1076543 chr22:18446490 T/C 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs1076544 chr22:18446565 G/A 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs10771522 chr12:9470893 A/G 2.43E-12 485 17.05 24.6 31.37 KM Plot